Example of how to use the summary plot¶

In [1]:

from pyMut.input import read_maf

maf_path = "../../../src/pyMut/data/examples/MAF/tcga_laml.maf.gz"
print(f'📂 Loading file: {maf_path}')

# Read the MAF file and create the PyMutation object
py_mutation = read_maf(maf_path,assembly="37")

from pyMut.input import read_maf maf_path = "../../../src/pyMut/data/examples/MAF/tcga_laml.maf.gz" print(f'📂 Loading file: {maf_path}') # Read the MAF file and create the PyMutation object py_mutation = read_maf(maf_path,assembly="37")

2025-08-01 00:59:35,029 | INFO | pyMut.input | Starting MAF reading: ../../../src/pyMut/data/examples/MAF/tcga_laml.maf.gz
2025-08-01 00:59:35,030 | INFO | pyMut.input | Loading from cache: ../../../src/pyMut/data/examples/MAF/.pymut_cache/tcga_laml.maf_8bfbda65c4b23428.parquet
2025-08-01 00:59:35,058 | INFO | pyMut.input | Cache loaded successfully in 0.03 seconds

📂 Cargando archivo: ../../../src/pyMut/data/examples/MAF/tcga_laml.maf.gz

In [2]:

py_mutation.configure_high_quality_plots()

py_mutation.configure_high_quality_plots()

In [3]:

py_mutation.summary_plot()

py_mutation.summary_plot()

Out[3]:

In [4]:

py_mutation.snv_class_plot().savefig("summary_plot.png")

py_mutation.snv_class_plot().savefig("summary_plot.png")