Installation Guide¶

Option 1: Basic Installation (pip)¶

pip install pymut-bio

Note: The pip installation provides core functionality for mutation data visualization, but some advanced features may be limited as certain bioinformatics tools are not available through PyPI.

Option 2: Full Installation (Recommended - Conda)¶

For complete functionality including all bioinformatics tools, use the conda environment:

# 0) Descargar el environment.yml (elige curl o wget)
curl -fsSL https://raw.githubusercontent.com/Luisruimor/pyMut/main/environment.yml -o environment.yml
# ó:
# wget -O environment.yml https://raw.githubusercontent.com/Luisruimor/pyMut/main/environment.yml

# 1) crear el entorno (añade tus binarios al environment.yml)
conda env create -f environment.yml

# 2) activar el entorno
conda activate NOMBRE-DEL-ENTORNO

# 3) instalar tu librería desde PyPI en ese entorno
pip install pymut-bio

The conda environment includes essential bioinformatics tools: - bcftools: VCF/BCF file manipulation - ensembl-vep: Variant Effect Predictor - htslib: High-throughput sequencing data processing - tabix: Generic indexer for TAB-delimited genome position files

These tools enable advanced genomic data processing capabilities that are not available with pip-only installation.